rs225374170 SNP Detail

Summary

• ID
  rs225374170
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23491790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAACAAG CTTCTCCCTT
  CGCTGAGCTC TTTCCCTTTT TCACTCCGTG GAAGTCACAA CTTTTAATCC TTCCTTCCCT
  GTACAGGATG TTGCCTGTCC AGTGTGGCTT TTTAATCTTT GGTTTGTTTG CATTGTAGTT
  CTCACAGATA AGATTTTAGC AAATTTACTC TATCTTGGTT AGTAACGGAT AAAACTGAAG
  R
  GTCAGAGGGT TTCCGTAGTG TAGTGGTTAT CACGCTCGCC TCACACGCGA GAGGTCCCCG
  GTTCGAAACC GGGCGGAAAC AGTACTGTTT TTCTCACTTT CTCTTGTGTT TTCAGAGTCT
  CAGCTCATTC CCTACACTTC TGAGGAGTCA AAACAATCTC AGCTCCTTGG TTTCACTGTT
  ATGCTTTCCT GAGTCCTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324288353	CHEV_13_23399489	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225374170					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23491790 () rs orientation: forward

Symbol	Name	Function Class
4930557F10Rik	RIKEN cDNA 4930557F10 gene	within coordinates
4930597G05Rik	RIKEN cDNA 4930597G05 gene	1811 bp downstream
Cpgi5346	CpG island 5346	1869 bp proximal
n-TIaat9	nuclear encoded tRNA isoleucine 9 (anticodon AAT)	1432 bp downstream
n-TVcac11	nuclear encoded tRNA valine 11 (anticodon CAC)	9 bp upstream
Rr475820	regulatory region 475820	within coordinates
Rr475821	regulatory region 475821	933 bp proximal