rs225374554 SNP Detail

Summary

• ID
  rs225374554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:15227347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTACAGA GTGAGTTCCA
  GGACAGCCAG AACTATACAG AGAAACGCTG TCTCATTAAA CAAACACAAA AACCCTTATA
  AGTTGCCGGG CAGTGGTGGC GCACGCCTTT AATCCCAGCA CTCAGGAGGC AGAGGCAGGC
  GGGTTTCTGA GTTCGAGGCC AGCCTGGTCT ACAGAGTGAG TTCCAGGACA GCCAGGACTA
  Y
  ACAGAGAAAC GCTGTCTCAT TAAACAAACA CAAAACCCTT ATAAGTTGCC GGGCAGTGGT
  GGCGCACGCC TTTAATCCCA GCACTCAGGA GGCAGAGGCA GGCGGGTTTC TGAGTTCGAG
  GCCAGCCTGG TCTACAGAGT GAGTTCCAGG ACAGCCAGGA CTACACAGAG AAACGCTGTC
  TCATTAAACA AACACAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
ss376730010	MGP_WTSI_9_15120495	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
rs225374554					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376730010	MGP_WTSI_9_15120495	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15227347 () rs orientation: forward

Symbol	Name	Function Class
Cep295	centrosomal protein 295	864 bp downstream
Gm22579	predicted gene, 22579	625 bp upstream
Gm22620	predicted gene, 22620	730 bp downstream
Gm23455	predicted gene, 23455	438 bp upstream
Gm24299	predicted gene, 24299	1907 bp downstream
Gm24357	predicted gene, 24357	456 bp downstream
Gm25791	predicted gene, 25791	1070 bp downstream
Gm56154	predicted gene, 56154	1143 bp downstream
Rr208215	regulatory region 208215	within coordinates
Taf1d	TATA-box binding protein associated factor, RNA polymerase I, D	within coordinates
Tssr83865	transcription start site region 83865	515 bp downstream