rs225389616 SNP Detail

Summary

• ID
  rs225389616
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40903377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA AAGTTCAAGA
  CTAGCTGGTG GGTAGCACGC ATGCCTGTTG GTCATCCCAT TTCAAAAGCT AAGGCAGGTG
  CATTCCTTTG AGTTCAGAAC CAGACTGGTC TAAATCGATG GCTTCCAGGG CAACCTGGAC
  TAGAATGGTA GGCTCACGGC CAGCCTCGAG ATCGAGGTCA ACTTGTGCTA CAGGAGACTT
  W
  GTTTGATGAA AACATCAAAA CCCACTGAAA AAAAATGAAA AATGAAAAAG GTGGCGAAAT
  GTCTAGTGTT CGTTTTACTC AAGAGCACTA AAGAATCATT TCGTTGTCTG TAGGTTAGAA
  TCAGGACCGA CAAGTGCACT TCTTGTAATG TCGAGGCTGG GTCTTCACTT GAACTTGGCT
  CCGGATCAGG AGTGCCTATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357671127	MGP_WTSI_3_40752864	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225389616					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357671127	MGP_WTSI_3_40752864	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40903377 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13115	CpG island 13115	189 bp proximal
Gm64655	predicted gene, 64655	54 bp downstream
Larp1b	La ribonucleoprotein 1B	886 bp upstream
Rr397652	regulatory region 397652	570 bp upstream
Rr575871	regulatory region 575871	within coordinates
Rr575872	regulatory region 575872	573 bp proximal
Rr575873	regulatory region 575873	1112 bp proximal
Rr575874	regulatory region 575874	1199 bp proximal
Rr575875	regulatory region 575875	1861 bp proximal
Tssr28976	transcription start site region 28976	839 bp upstream
Tssr28977	transcription start site region 28977	876 bp upstream
Tssr28978	transcription start site region 28978	973 bp upstream
Tssr28979	transcription start site region 28979	1003 bp upstream
Tssr28980	transcription start site region 28980	1021 bp upstream
Tssr28981	transcription start site region 28981	1460 bp upstream
Tssr28982	transcription start site region 28982	1696 bp upstream
Tssr28983	transcription start site region 28983	1837 bp upstream