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rs225389963 SNP Detail
Summary
  • ID
    rs225389963
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr16:49675583 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCTCATTATG CATGGAACTT
GATTGCCCAA CCCTGCTTGG GGGATGAAAA CATTAGCCAA CAAAGAAAGA AAAACAGATA
AGGAGGTCCA CTTCTGGAAC AAGTCAGACC GGGGAGAGAT CAGGGCCAGG GGGAGCCAGA
GGGAAGGAGT TCCTCGGGGG CCAGGACCTG GTCACAGCGC CCTCTCTCCG CCCAGCCCTG
S
GGCTCCAGGG CTGCGCGCCT TGGGAGGGAA GATGGTGAAA GCAGAAGCAG CGCCTACACC
GGGAGAGCAG GGAGGAGGAG TTGGACTGAG GTTGGGCGGC TCCGAGGTCC AGGGCGAGCT
TGGCCAGAGG GAGTAGAGAG CAGCGGGGCT GCGCAGGGAC GCGTGCCGTG AGTTCCGGTG
AGCGTGTGTG TCCCATGCTC                                            

S = C/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss396238733 MGP_WTSI_16_49855333 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225389963 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss396238733 MGP_WTSI_16_49855333 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr16:49675583 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cd47 CD47 antigen (Rh-related antigen, integrin-associated signal transducer) within coordinates
Cpgi8307 CpG island 8307 within coordinates
Gm4633 predicted gene 4633 174 bp upstream
Gm56621 predicted gene, 56621 within coordinates
Gm60685 predicted gene, 60685 1017 bp upstream
Rr370104 regulatory region 370104 824 bp upstream
Rr516740 regulatory region 516740 1771 bp distal
Rr516741 regulatory region 516741 712 bp distal
Rr516742 regulatory region 516742 within coordinates
Rr516743 regulatory region 516743 157 bp proximal
Rr516744 regulatory region 516744 271 bp proximal
Rr516745 regulatory region 516745 941 bp proximal
Tssr4899 transcription start site region 4899 104 bp downstream
Tssr4900 transcription start site region 4900 40 bp upstream
Tssr4901 transcription start site region 4901 150 bp upstream
Tssr4902 transcription start site region 4902 265 bp upstream
Tssr4903 transcription start site region 4903 547 bp upstream
Tssr138724 transcription start site region 138724 861 bp downstream
Tssr138725 transcription start site region 138725 676 bp downstream
Tssr138726 transcription start site region 138726 120 bp downstream
Tssr138727 transcription start site region 138727 90 bp downstream
Tssr138728 transcription start site region 138728 129 bp upstream
Tssr138729 transcription start site region 138729 404 bp upstream
Tssr138730 transcription start site region 138730 525 bp upstream
Tssr138731 transcription start site region 138731 852 bp upstream
Tssr138732 transcription start site region 138732 998 bp upstream
Tssr138733 transcription start site region 138733 1086 bp upstream
Tssr138734 transcription start site region 138734 1338 bp upstream
Tssr138735 transcription start site region 138735 1376 bp upstream
Tssr141348 transcription start site region 141348 77 bp downstream
Tssr141349 transcription start site region 141349 297 bp downstream
Tssr141350 transcription start site region 141350 612 bp downstream
Tssr141351 transcription start site region 141351 896 bp downstream
Tssr141352 transcription start site region 141352 1127 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory