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rs225398911 SNP Detail
Summary
  • ID
    rs225398911
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:93350945 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GATCGCGACT GCAACGGGCG
TGTTGATTTC AACGAATTCC TCCTGTTCCT TTTCAAGATT GCTCAAGCTT GCTATTATGC
TCTCGATCAG GCCGCAGAGC TAGGCGAGAA GAGAGCCCTG CCCAATGAAA AGAGGAACCT
GTCACAAGAT CGCAGGCAAG AAGACCAAAG GAGATTCGAG CCCCGAAGCA GACAACTGGA
Y
GAAGAACCTG GGCGCCGAAG CTGGCAGAAG AGACGTGAGC AGGAGGAGCG CGCTGAGGAG
CAGCGGCTGG AGCAGCGCTA CAGGCAGCAC CGCGATGAAG AGCAGAGACT GCAAAGGCGA
GAACTGCAAG AACTGGAGGA ACGCCTTGCA GAGAAAGAGC CGCTTGGCTG GAGTAAGGGT
CGTGACGCGG AGGAGTTTTC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358876311 MGP_WTSI_3_93247560 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225398911 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358876311 MGP_WTSI_3_93247560 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93350945 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 within coordinates
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr960 transcription start site region 960 208 bp downstream
Tssr961 transcription start site region 961 365 bp upstream
Tssr962 transcription start site region 962 1485 bp upstream
Tssr963 transcription start site region 963 1522 bp upstream
Tssr964 transcription start site region 964 1618 bp upstream
Tssr30345 transcription start site region 30345 1249 bp downstream
Tssr30346 transcription start site region 30346 1224 bp downstream
Tssr30347 transcription start site region 30347 165 bp downstream
Tssr30348 transcription start site region 30348 145 bp downstream
Tssr30349 transcription start site region 30349 133 bp downstream
Tssr30350 transcription start site region 30350 89 bp downstream
Tssr30351 transcription start site region 30351 65 bp downstream
Tssr30352 transcription start site region 30352 15 bp downstream
Tssr30353 transcription start site region 30353 within coordinates
Tssr30354 transcription start site region 30354 10 bp upstream
Tssr30355 transcription start site region 30355 29 bp upstream
Tssr30356 transcription start site region 30356 42 bp upstream
Tssr30357 transcription start site region 30357 140 bp upstream
Tssr30358 transcription start site region 30358 255 bp upstream
Tssr30359 transcription start site region 30359 284 bp upstream
Tssr30360 transcription start site region 30360 314 bp upstream
Tssr30361 transcription start site region 30361 639 bp upstream
Tssr30362 transcription start site region 30362 653 bp upstream
Tssr30363 transcription start site region 30363 796 bp upstream
Tssr30364 transcription start site region 30364 867 bp upstream
Tssr30365 transcription start site region 30365 902 bp upstream
Tssr30366 transcription start site region 30366 954 bp upstream
Tssr30367 transcription start site region 30367 998 bp upstream
Tssr30368 transcription start site region 30368 1015 bp upstream
Tssr30369 transcription start site region 30369 1028 bp upstream
Tssr30370 transcription start site region 30370 1035 bp upstream
Tssr30371 transcription start site region 30371 1055 bp upstream
Tssr30372 transcription start site region 30372 1068 bp upstream
Tssr30373 transcription start site region 30373 1119 bp upstream
Tssr30374 transcription start site region 30374 1137 bp upstream
Tssr30375 transcription start site region 30375 1150 bp upstream
Tssr30376 transcription start site region 30376 1176 bp upstream
Tssr30377 transcription start site region 30377 1198 bp upstream
Tssr30378 transcription start site region 30378 1231 bp upstream
Tssr30379 transcription start site region 30379 1249 bp upstream
Tssr30380 transcription start site region 30380 1329 bp upstream
Tssr30381 transcription start site region 30381 1347 bp upstream
Tssr30382 transcription start site region 30382 1406 bp upstream
Tssr30383 transcription start site region 30383 1417 bp upstream
Tssr30384 transcription start site region 30384 1426 bp upstream
Tssr30385 transcription start site region 30385 1442 bp upstream
Tssr30386 transcription start site region 30386 1463 bp upstream
Tssr30387 transcription start site region 30387 1554 bp upstream
Tssr30388 transcription start site region 30388 1580 bp upstream
Tssr30389 transcription start site region 30389 1594 bp upstream
Tssr30390 transcription start site region 30390 1666 bp upstream
Tssr30391 transcription start site region 30391 1685 bp upstream
Tssr30392 transcription start site region 30392 1703 bp upstream
Tssr30393 transcription start site region 30393 1720 bp upstream
Tssr30394 transcription start site region 30394 1740 bp upstream
Tssr30395 transcription start site region 30395 1765 bp upstream
Tssr30396 transcription start site region 30396 1814 bp upstream
Tssr30397 transcription start site region 30397 1831 bp upstream
Tssr30398 transcription start site region 30398 1906 bp upstream
Tssr30399 transcription start site region 30399 1953 bp upstream
Tssr34352 transcription start site region 34352 226 bp downstream
Tssr34353 transcription start site region 34353 247 bp downstream
Tssr34354 transcription start site region 34354 257 bp downstream
Tssr34355 transcription start site region 34355 395 bp downstream
Tssr34356 transcription start site region 34356 1067 bp downstream
Tssr34357 transcription start site region 34357 1112 bp downstream
Tssr34358 transcription start site region 34358 1164 bp downstream
Tssr34359 transcription start site region 34359 1233 bp downstream
Tssr34360 transcription start site region 34360 1314 bp downstream
Tssr34361 transcription start site region 34361 1335 bp downstream
Tssr34362 transcription start site region 34362 1384 bp downstream
Tssr34363 transcription start site region 34363 1411 bp downstream
Tssr34364 transcription start site region 34364 1428 bp downstream
Tssr34365 transcription start site region 34365 1442 bp downstream
Tssr34366 transcription start site region 34366 1502 bp downstream
Tssr34367 transcription start site region 34367 1635 bp downstream
Tssr34368 transcription start site region 34368 1714 bp downstream
Tssr34369 transcription start site region 34369 1739 bp downstream
Tssr34370 transcription start site region 34370 1753 bp downstream
Tssr34371 transcription start site region 34371 1807 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory