rs225406377 SNP Detail

Summary

• ID
  rs225406377
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103589820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTACAATATT TGCCTAGCTG GGGACCTAAA CTCAATTCCT
  CCAGCATTTA ATAAAATATA AATGTTATCA AATTACCTAT AACAAATAGG CCCCCCCCCC
  M
  AAAAAAATTA AGACAATCAA TCACACTCCC CCGGTATTAG AGTGTCAGGC TATGTGTGAT
  TTTAAAATTC AGGAACCTGT TGTGCTTTAA ACAAAACCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320442794	CHEV_2_103599632	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225406377					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103589820 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11984	CpG island 11984	1249 bp proximal
Gm75186	predicted gene, 75186	1911 bp upstream
Nat10	N-acetyltransferase 10	within coordinates
Rr55318	regulatory region 55318	580 bp proximal
Rr367263	regulatory region 367263	1722 bp upstream
Tssr19170	transcription start site region 19170	1938 bp upstream
Tssr25490	transcription start site region 25490	1447 bp downstream
Tssr25491	transcription start site region 25491	1603 bp downstream
Tssr25492	transcription start site region 25492	1688 bp downstream
Tssr25493	transcription start site region 25493	1703 bp downstream