rs225406742 SNP Detail

Summary

• ID
  rs225406742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95859466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACATTTT TCACTGACCT
  TGTCCTCAGG AGCTAACCCT CCTATCTATC CATCCCCTTT CCCTACTCCT GGAACTGCTG
  CTAATTGATA AAACTTAAAA CTACATCAGT CAAGTTGAGC AGGTGCTGGG AGAAAGCACT
  GAAGAAAACC GACTCCGAGA CTACACATAA AACAGGAAGA CAGCAGGGCT TGGTGGCGCA
  Y
  GCCTTTAATC CCAGCACTTG GGAGGCAGAG GTAGGCGATT TTCTGAGTTC GAGGCCAGCC
  TGGTCTACAA AGTAAGTTCC AGGACAGAGA AATCCTGCTT CGAAAAAACA AACAAACAAA
  AAACACGAAG GCTCTTTCTT TACCGAACGA GTGATTCCAA CAGAGAGACT TTGTAAAGGT
  CCATTACAGA GAGAGTTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358910649	MGP_WTSI_3_95756077	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225406742					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358910649	MGP_WTSI_3_95756077	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95859466 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13530	CpG island 13530	664 bp distal
Gm56819	predicted gene, 56819	863 bp upstream
Gm65572	predicted gene, 65572	468 bp downstream
Rr375411	regulatory region 375411	266 bp downstream
Rr581095	regulatory region 581095	874 bp distal
Rr581096	regulatory region 581096	816 bp distal
Rr581097	regulatory region 581097	170 bp distal
Rr581098	regulatory region 581098	944 bp proximal
Rr581099	regulatory region 581099	1975 bp proximal
Tssr30663	transcription start site region 30663	1068 bp downstream
Tssr30664	transcription start site region 30664	787 bp downstream
Tssr34570	transcription start site region 34570	1118 bp upstream