rs225408034 SNP Detail

Summary

• ID
  rs225408034
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:69888602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCTGGGC GGTGGGAGCC
  TAGAATGACA GAAGGAACAC GTAAGGACTT TAAAGTCAGG GCGGAAAGCG GGATGAAAGG
  GTAGATCTAC TGCAAACTTA AAGAACAGCC CGTTCAAAGT CACGACTAAA AGCAAACCTT
  TAGCCAATCC ACTCAGCCCT CACTGGTTTG CTCCTTCCAC CCCATCCCCT GCCTGCTGGC
  S
  GCAGCGTTTC GGCTTTCCAT GGCCAGGCTG TGCGTGGTGG CTGCTTTCCA AAATGCAGCG
  GAGAATAACA CCAGACGCCT TCTCTGGCGC TGACCGGTGC TAAGAGCGGG AAAGGACTTT
  CCGAGCAGCA ACCCCCGTTG GCCACCCCCT CCCCGCCCCC CAGGGCTGCT CTCCTGAGTG
  AGGGACCTCC ACAATACTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388958234	MGP_WTSI_13_69879361	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225408034					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388958234	MGP_WTSI_13_69879361	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:69888602 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5814	CpG island 5814	within coordinates
Gm60959	predicted gene, 60959	within coordinates
Gm60969	predicted gene, 60969	within coordinates
Rr482198	regulatory region 482198	1837 bp distal
Rr482199	regulatory region 482199	104 bp distal
Rr482200	regulatory region 482200	548 bp distal
Rr482201	regulatory region 482201	461 bp distal
Rr482202	regulatory region 482202	433 bp proximal
Tssr123143	transcription start site region 123143	1532 bp upstream
Tssr123144	transcription start site region 123144	1510 bp upstream
Tssr123145	transcription start site region 123145	1493 bp upstream
Tssr123146	transcription start site region 123146	1046 bp upstream
Tssr123147	transcription start site region 123147	594 bp upstream
Ube2ql1	ubiquitin-conjugating enzyme E2Q family-like 1	594 bp upstream