rs225416995 SNP Detail

Summary

• ID
  rs225416995
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:59521430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCACGCAG GGGACCGGCG
  GCAGCTGTGT GAGCTCACCC GGGCCCAGCC GAATCGCCGA CTACCTGCTG CTACCCCTAG
  CTGAGCGCGA GCATGTGTCC CGGGCACTGT GCATCCACAC CGGCCGCGAG CTGCGCTGCA
  AGGTAAGCAT CCTGGGGCGG AGGTTGCGGG TCTGGATCGT CCACAGAAGT GCCTAGGTTC
  Y
  GGCCCACCGG GATCACAGTC CCGCCAGCGC TTGGGTTTGG CAGAGCAGAT AAGGGCGTTT
  AGTTGGATAA GGAGGGTATT TTGGTCAGCT TCGTGTTTTT GGAGGTTGAG TGCTTTCCTG
  TGGAGTGTTT TTTGGTGAGG GTTAGGCGGT CTAGAGGAAG TGCAGGGTTC AGTTCTTTTA
  TCTCTGTTCT TTTCTTTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394214956	MGP_WTSI_15_59481136	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225416995					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394214956	MGP_WTSI_15_59481136	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:59521430 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7127	CpG island 7127	within coordinates
Gm56697	predicted gene, 56697	within coordinates
Rr311787	regulatory region 311787	within coordinates
Rr390806	regulatory region 390806	1836 bp upstream
Trib1	tribbles pseudokinase 1	within coordinates
Tssr4603	transcription start site region 4603	689 bp downstream
Tssr131384	transcription start site region 131384	1274 bp downstream
Tssr131385	transcription start site region 131385	1212 bp downstream
Tssr131386	transcription start site region 131386	1150 bp downstream
Tssr131387	transcription start site region 131387	1044 bp downstream
Tssr131388	transcription start site region 131388	1020 bp downstream
Tssr131389	transcription start site region 131389	992 bp downstream
Tssr131390	transcription start site region 131390	894 bp downstream
Tssr131391	transcription start site region 131391	876 bp downstream
Tssr131392	transcription start site region 131392	1143 bp upstream
Tssr134444	transcription start site region 134444	1445 bp upstream
Tssr134445	transcription start site region 134445	1413 bp upstream
Tssr134446	transcription start site region 134446	1022 bp downstream