rs225421119 SNP Detail

Summary

• ID
  rs225421119
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177275841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTGGATC GGGAGGACAA
  AGCCAGCGAT GATGAGATGA TGACCCCAGA GAGCGAGCGG GTCCAGGTGG AAGGGGGCAT
  GGAGAACAGT CTGCTTCCCT ACGTCTCCAA TATCCTGAGC CCCGCAGGCC AGATCTTCAT
  GTGCCCCCTG TGCAACAAAG TCTTCCCCAG CCCCCACATC CTGCAGATCC ACCTGAGCAC
  R
  CACTTCCGAG AGCAGGATGG CATCCGTAGC AAGCCTGCCG CCGATGTCAA TGTGCCCACG
  TGCTCCCTGT GTGGGAAGAC TTTCTCCTGC ATGTACACCC TCAAGCGCCA CGAGAGGACT
  CACTCGGGGG AGAAGCCCTA CACGTGCACC CAATGCGGCA AGAGTTTCCA GTACTCGCAC
  AACCTGAGCC GTCATGCCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352522308	MGP_WTSI_1_179378406	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225421119					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352522308	MGP_WTSI_1_179378406	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177275841 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1082	CpG island 1082	within coordinates
Rr29056	regulatory region 29056	within coordinates
Rr29057	regulatory region 29057	1359 bp proximal
Tssr312	transcription start site region 312	1097 bp downstream
Tssr313	transcription start site region 313	413 bp downstream
Tssr10353	transcription start site region 10353	1140 bp downstream
Tssr10354	transcription start site region 10354	1119 bp downstream
Tssr10355	transcription start site region 10355	1075 bp downstream
Tssr10356	transcription start site region 10356	984 bp downstream
Tssr10357	transcription start site region 10357	900 bp downstream
Tssr10358	transcription start site region 10358	817 bp downstream
Tssr10359	transcription start site region 10359	802 bp downstream
Tssr10360	transcription start site region 10360	65 bp downstream
Tssr10361	transcription start site region 10361	24 bp downstream
Zbtb18	zinc finger and BTB domain containing 18	within coordinates