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rs225421370 SNP Detail
Summary
  • ID
    rs225421370
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:140428106 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGCACCTCTG GCCACTTCTC
TTCCCGGATT CCTAGACCCT GCACTGTCCC ACGGGGTAGG GGAAAGGTTT CCTCTCCCAC
TTCTGCCAGG TCAGATTCTT TACAATTTTA AAACTCAGCT CTCCCAGGGA ACGCCTTCCT
TGATCCTGGA ACCCGGTAAG TACCATGCTT TCAGTAATTT CTTAATCTTT CCTCTTACTT
Y
GCCTTCCAAC TGGGCAGAGA TCTTGTTCTC CAGGTCTGTA TTCTAAGCTT CTAGCACCTT
TGCATCTAGT CTTGCTTGTA CTGAGGCGCG GTAAATACGT TTTTAAAATG AAGAAAATTC
CCATCACAAG TACTTTCAAG TCCACCTATG CTAATTACTA ATTTCATAGT ACGTCCCCCA
GCTAATTACT AATTTCATAC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss363501321 MGP_WTSI_4_140256710 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225421370 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss363501321 MGP_WTSI_4_140256710 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:140428106 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi15194 CpG island 15194 816 bp distal
Cpgi15195 CpG island 15195 270 bp proximal
Gm69527 predicted gene, 69527 within coordinates
Gm69529 predicted gene, 69529 325 bp downstream
Rcc2 regulator of chromosome condensation 2 within coordinates
Rr377298 regulatory region 377298 within coordinates
Rr603517 regulatory region 603517 912 bp distal
Rr603518 regulatory region 603518 244 bp distal
Rr603519 regulatory region 603519 within coordinates
Rr603520 regulatory region 603520 465 bp proximal
Rr603521 regulatory region 603521 615 bp proximal
Tssr39970 transcription start site region 39970 913 bp downstream
Tssr39971 transcription start site region 39971 840 bp downstream
Tssr39972 transcription start site region 39972 820 bp downstream
Tssr39973 transcription start site region 39973 797 bp downstream
Tssr39974 transcription start site region 39974 449 bp downstream
Tssr39975 transcription start site region 39975 310 bp downstream
Tssr39976 transcription start site region 39976 266 bp downstream
Tssr39977 transcription start site region 39977 182 bp downstream
Tssr39978 transcription start site region 39978 631 bp upstream
Tssr39979 transcription start site region 39979 652 bp upstream
Tssr39980 transcription start site region 39980 671 bp upstream
Tssr39981 transcription start site region 39981 715 bp upstream
Tssr39982 transcription start site region 39982 727 bp upstream
Tssr39983 transcription start site region 39983 813 bp upstream
Tssr39984 transcription start site region 39984 1038 bp upstream
Tssr39985 transcription start site region 39985 1100 bp upstream
Tssr39986 transcription start site region 39986 1141 bp upstream
Tssr39987 transcription start site region 39987 1286 bp upstream
Tssr39988 transcription start site region 39988 1382 bp upstream
Tssr39989 transcription start site region 39989 1421 bp upstream
Tssr44270 transcription start site region 44270 1145 bp upstream
Tssr44271 transcription start site region 44271 1112 bp upstream
Tssr44272 transcription start site region 44272 972 bp upstream
Tssr44273 transcription start site region 44273 274 bp downstream
Tssr44274 transcription start site region 44274 1603 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory