rs225422236 SNP Detail

Summary

• ID
  rs225422236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:111935240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGAACAA CCTTAGTCAA
  GGGTATCTAG TCTTTTGACT TTGGGATGTG ACACTGTCAT GCATGGATAT GCTTGGTCAT
  GTTTGTAGTT ATCCTGGGAT GCATGTGGCT TGTGGATACA TGCGTGCTTA GCTAATTTCT
  AAGTAGACTG TGAGCCTCCT GAGAGTCACT GCAAGCAGGG ACTGCTGGTC AATTGCAAGG
  Y
  TCTGGGTGCC TTAAAGGTGA AAGCGAGCCA AATTCTTGTG CCCTTACACC CCACCCCTCC
  CAGTCAGGGA GGCACCGATT GGTGAGCCAA AGCTATGCCT CAACCTCAGC TCTCAAAACA
  GCAATACTAA GCTGATGCCA GAAAGCTTGC CTTAGCCTGA GAAGTACAGC TTCCTCCAGA
  CCACCTACTT ACTCAGAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322412410	CHEV_7_119479547	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225422236					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:111935240 () rs orientation: forward

Symbol	Name	Function Class
Mical2	microtubule associated monooxygenase, calponin and LIM domain containing 2	within coordinates
Tssr68564	transcription start site region 68564	560 bp upstream