CAATGCTCAT ACTGGAGGGG GCCTGGGCGA AGCTAGAGTC CAGCCAGGGG GAGCAGGGTG AGGTCGCAAT TCACCCTGTG GCGTAAAGCC GCCGAGCGAT GGGTGCGAGA GAACCACGGG GAACTCGGGA CGCGGGGTTC CGGACGCGGG AAGAGAAGAC GCCCCTCCCC CACCTCAAGC AGGAAACATC AGTATTTCGC W AAGGCGAGCG CCCGCACATG CGCACTCGGT TACTTAGCAA CGTCGACGTT AAACTGCCCG AGAACCGAGC CCAGCAACAA TCGAGCGGCC CGCGACCTCC ACCAATCAGC GTCGGCCTCA TCTTTGACTC CTCACCAATC AGCGCTGGCG CCGCAAGGAG GTTTCCAGAG CTTTCGAGGG AGGGCCCTTT AACTTGGATT W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss383609410 | MGP_WTSI_11_62364551 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | A | T | T | T | T |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs225425836 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | A | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss383609410 | MGP_WTSI_11_62364551 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/T |
Location: Chr11:62441875 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi3024 | CpG island 3024 | within coordinates | ||||||
Gm12279 | predicted gene 12279 | within coordinates | ||||||
Gm71785 | predicted gene, 71785 | 19 bp downstream | ||||||
Rr246927 | regulatory region 246927 | within coordinates | ||||||
Rr386162 | regulatory region 386162 | within coordinates | ||||||
Tssr102022 | transcription start site region 102022 | 504 bp downstream | ||||||
Tssr102023 | transcription start site region 102023 | 449 bp downstream | ||||||
Tssr102024 | transcription start site region 102024 | 192 bp downstream | ||||||
Tssr102025 | transcription start site region 102025 | 118 bp upstream | ||||||
Tssr102026 | transcription start site region 102026 | 185 bp upstream | ||||||
Tssr102027 | transcription start site region 102027 | 213 bp upstream | ||||||
Tssr102028 | transcription start site region 102028 | 399 bp upstream | ||||||
Tssr102029 | transcription start site region 102029 | 412 bp upstream | ||||||
Tssr102030 | transcription start site region 102030 | 444 bp upstream | ||||||
Tssr102031 | transcription start site region 102031 | 672 bp upstream | ||||||
Tssr102032 | transcription start site region 102032 | 689 bp upstream | ||||||
Tssr102033 | transcription start site region 102033 | 707 bp upstream | ||||||
Tssr102034 | transcription start site region 102034 | 725 bp upstream | ||||||
Tssr102035 | transcription start site region 102035 | 799 bp upstream | ||||||
Tssr108430 | transcription start site region 108430 | 69 bp upstream | ||||||
Tssr108431 | transcription start site region 108431 | 30 bp upstream | ||||||
Ubb | ubiquitin B | 454 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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