rs225431790 SNP Detail

Summary

• ID
  rs225431790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139337744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACCCGCCC GCAGAGCCCT TTCTCACAGA
  GGCACCTCCT CCCCAGTGAG GCCTCCAGGG TTTAAGAGAC AGGATTAGAG CCCAGACAGC
  TAGGGCTGTA AACCCAGCCA CCTGCTGGGT CTGTTCACGG TCTCCTAAAT GGGATGGCCC
  Y
  TCAGTGTCTG GGTGGTTGTG CCCCTTACTC CAGGCTGCTG GGGTGAGAGC TCCCTCAGCT
  TCAGCAGACA CTCACTGCTT CTGAAGGCTA TGAGCTTTGA GGTCCTTGTG GTGAGAGAGG
  TCCTTGATGG CTGCACAGGG CATTCAGTGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321704300	CHEV_5_139827943	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225431790					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139337744 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	628 bp upstream
Rr623253	regulatory region 623253	1863 bp distal
Rr623254	regulatory region 623254	582 bp distal
Rr623255	regulatory region 623255	81 bp distal
Rr623256	regulatory region 623256	138 bp proximal
Rr623257	regulatory region 623257	1707 bp proximal
Tssr49499	transcription start site region 49499	618 bp upstream