rs225436396 SNP Detail

Summary

• ID
  rs225436396
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97806095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTTCAGT GACCACTCTT
  TGAAGTTTCT AGGGCTCATT TGATCAGGTC TGGAGTGCGT ACGCTTCCTT TCCCACTTTT
  TCTCATGTTA TTTTTGGCAC TGCTGGTGTT GGAAGCTGGG GAAGTGATTC ACTGCAAAGT
  GAATTAATTT TCCACGTTTT CTGATACGTT CCCCAGTCGC CCCCTGGTTC CTCTCCCCCC
  G
  CCCCCCCCCC CCAGAGATGA CTCTGCACTT ACACTGCTGT CATCTTTGCT GGCTCAGACA
  GAAATGCTGA TGTCACTCAG ATTTCTTAAA TTACAGCTGC TAGGAATTAA CAGAAATCGT
  AAAAGTATAC CACTTCCTCA TTTTGCTTCT TTCTGGACTA ATTATTGTCC TTCTAAGTCC
  TTGGGGAGGT TAGGACCTTG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	WSB/EiJ
ss369337455	MGP_WTSI_6_97779128	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	WSB/EiJ
rs225436396					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369337455	MGP_WTSI_6_97779128	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97806095 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Tssr1945	transcription start site region 1945	1818 bp downstream
Tssr57867	transcription start site region 57867	1892 bp downstream
Tssr57868	transcription start site region 57868	1870 bp downstream
Tssr57869	transcription start site region 57869	1832 bp downstream
Tssr57870	transcription start site region 57870	1673 bp downstream
Tssr57871	transcription start site region 57871	1655 bp downstream
Tssr57872	transcription start site region 57872	885 bp downstream
Tssr57873	transcription start site region 57873	839 bp downstream
Tssr57874	transcription start site region 57874	822 bp downstream
Tssr57875	transcription start site region 57875	802 bp downstream
Tssr57876	transcription start site region 57876	772 bp downstream
Tssr57877	transcription start site region 57877	126 bp upstream
Tssr57878	transcription start site region 57878	170 bp upstream
Tssr57879	transcription start site region 57879	186 bp upstream
Tssr57880	transcription start site region 57880	239 bp upstream
Tssr57881	transcription start site region 57881	439 bp upstream
Tssr57882	transcription start site region 57882	537 bp upstream
Tssr57883	transcription start site region 57883	1813 bp upstream