rs225437586 SNP Detail

Summary

• ID
  rs225437586
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:30121207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACACTCT TCAAGGTCAG
  CCCCTCCCAT TCAGAGTCTA AGTTAGCTCT GCGGCTTCAC CCGGGACTCC GGGGACTGTG
  GGCGGGGCTC CGCCTTGAAC CGGGCGTGGC CAAAAGACGA ATTTAAAAAC TCGCGGGGGA
  CCTGGCTTTA GATCGGGGAC CCGGCGGCGG CTCCGCGGGG CAGGTAGCGA GGCTGGCGCA
  R
  CGCCGAGGCC GCGGCCCTGG GGGCCCACAG TCTGCATCCA AGAATCCTCG AGGTAAGAGC
  TGGGGGTAAA GCGAGGAACG CGCCTTTCTG GATGCTTTGA AGGTTGGCTG GAGCGTAAAG
  CTGGGCCCTG AGAATTGATT CTGGACGTTG AAGAGGAGAG GCTGGGATCC TGGACTTCTG
  AGTCCTTGGG AGTGTTGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370906846	MGP_WTSI_7_31206801	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225437586					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370906846	MGP_WTSI_7_31206801	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30121207 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi18799	CpG island 18799			within coordinates
Cpgi18800	CpG island 18800			1312 bp proximal
Hcst	hematopoietic cell signal transducer			1928 bp upstream
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta			Coding-Synonymous
				mRNA-UTR
Rr368301	regulatory region 368301			1840 bp downstream
Rr400239	regulatory region 400239			within coordinates
Rr400240	regulatory region 400240			350 bp upstream
Rr644813	regulatory region 644813			1438 bp distal
Rr644814	regulatory region 644814			40 bp distal
Rr644815	regulatory region 644815			134 bp proximal
Rr644816	regulatory region 644816			1003 bp proximal
Tssr2184	transcription start site region 2184			1562 bp upstream
Tssr65713	transcription start site region 65713			1833 bp downstream
Tssr65714	transcription start site region 65714			40 bp downstream
Tssr65715	transcription start site region 65715			490 bp upstream
Tssr65716	transcription start site region 65716			607 bp upstream
Tssr65717	transcription start site region 65717			651 bp upstream
Tssr65718	transcription start site region 65718			679 bp upstream
Tssr65719	transcription start site region 65719			1484 bp upstream
Tssr65720	transcription start site region 65720			1523 bp upstream
Tssr65721	transcription start site region 65721			1580 bp upstream
Tssr65722	transcription start site region 65722			1599 bp upstream
Tssr65723	transcription start site region 65723			1630 bp upstream
Tssr65724	transcription start site region 65724			1646 bp upstream
Tssr65725	transcription start site region 65725			1818 bp upstream
Tssr65726	transcription start site region 65726			1825 bp upstream
Tssr65727	transcription start site region 65727			1843 bp upstream
Tssr71742	transcription start site region 71742			1910 bp upstream
Tssr71743	transcription start site region 71743			1420 bp upstream
Tssr71744	transcription start site region 71744			1409 bp upstream
Tssr71745	transcription start site region 71745			146 bp upstream