rs225443216 SNP Detail

Summary

• ID
  rs225443216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25111206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTAGTAT GGTTGGAGCA
  TAAGTGCATC TTTGTGAATG AAAGAAAGTG GACTGGAAAG GTGTGTTGTG ACTAGAGCTT
  TGAGTTCATG GGGAGGACTC TAGCCCTGGT GCCCATATAG TGATAGAGAA GCCTTCCCTT
  CCAGAGTGGC CACTATGGGC CCCAGGACTG AAGAACTCAG AGAACTTTCC CTACAAAGGA
  R
  AGAAGTTGGA CATTGCCAGA GGCAGGTGAT CCTGGATTTA GGATCACATG ATGCTGAGTA
  TGCCACAGAG TACCTCACCC ACAGGAGAAA GGTACATGGA TAGAGATGAT CTTGCTTCTG
  TGTGGTGGCT CTGTGAAGAG CTGGGAAACA CTGGCTGTGG TGAAGACTAG AACAGATTCA
  GAACCTCTAC CGAGTCTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322121677	CHEV_7_26196800	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225443216					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25111206 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	within coordinates
Rr160903	regulatory region 160903	405 bp distal
Rr164493	regulatory region 164493	1924 bp proximal
Rr170192	regulatory region 170192	within coordinates
Rr170193	regulatory region 170193	796 bp proximal
Tssr2143	transcription start site region 2143	1016 bp downstream
Tssr2144	transcription start site region 2144	1166 bp downstream
Tssr2145	transcription start site region 2145	1184 bp downstream
Tssr2146	transcription start site region 2146	1202 bp downstream
Tssr2147	transcription start site region 2147	1245 bp downstream
Tssr71243	transcription start site region 71243	1026 bp downstream
Tssr71244	transcription start site region 71244	1051 bp downstream
Tssr71245	transcription start site region 71245	1064 bp downstream
Tssr71246	transcription start site region 71246	1076 bp downstream
Tssr71247	transcription start site region 71247	1121 bp downstream