rs225447166 SNP Detail

Summary

• ID
  rs225447166
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9302965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAAATTTG TGATCAGAAC
  TAAAACTATG CAATGCAATA TGAAGTCAAA ACAAGATGAG CGCATGCGTC CTTTAGTTAC
  ATGTGATACA TATCAAGTAG CAATGGAGGC CGAATCCTAA CCACCATGAG ACCCTTTGCC
  TCTGACACTT CCCTTGTGAG TGTGGTGCTT TCCTTTCTCT CCTGTTGGCT TCACCACTTT
  Y
  TCTCCATCAA GGCCTCTGCT CTCTACTCTT CCTTCCTCAT TACCAAAGCT GAATAGTTAT
  AAGTCTTTGT ATTCCTGGGG GGGGGGGGGC AGTCAGAAAT GCTTTTAGTT CCCAGAAAGA
  GGAGTAGTTT TCTCTTTTTT TTTTTTTTTT TCACATGTGA CTAGTCTAGC AGTCATCTAG
  ACTCTGTCTT GCATTTCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403025258	MGP_WTSI_X_9013852	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225447166					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403025258	MGP_WTSI_X_9013852	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9302965 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160517	transcription start site region 160517	1227 bp downstream
Tssr160518	transcription start site region 160518	725 bp downstream
Tssr160519	transcription start site region 160519	81 bp downstream
Tssr160520	transcription start site region 160520	17 bp downstream
Tssr160521	transcription start site region 160521	15 bp upstream
Tssr160522	transcription start site region 160522	146 bp upstream
Tssr162873	transcription start site region 162873	1078 bp upstream
Tssr162874	transcription start site region 162874	822 bp upstream
Tssr162875	transcription start site region 162875	799 bp upstream
Tssr162876	transcription start site region 162876	643 bp upstream
Tssr162877	transcription start site region 162877	624 bp upstream
Tssr162878	transcription start site region 162878	572 bp upstream
Tssr162879	transcription start site region 162879	466 bp upstream
Tssr162880	transcription start site region 162880	380 bp upstream
Tssr162881	transcription start site region 162881	362 bp upstream
Tssr162882	transcription start site region 162882	62 bp upstream
Tssr162883	transcription start site region 162883	315 bp downstream
Tssr162884	transcription start site region 162884	357 bp downstream
Tssr162885	transcription start site region 162885	401 bp downstream
Tssr162886	transcription start site region 162886	448 bp downstream
Tssr162887	transcription start site region 162887	475 bp downstream
Tssr162888	transcription start site region 162888	528 bp downstream
Tssr162889	transcription start site region 162889	558 bp downstream
Tssr162890	transcription start site region 162890	618 bp downstream
Tssr162891	transcription start site region 162891	652 bp downstream
Tssr162892	transcription start site region 162892	705 bp downstream
Tssr162893	transcription start site region 162893	809 bp downstream
Tssr162894	transcription start site region 162894	839 bp downstream
Tssr162895	transcription start site region 162895	899 bp downstream
Tssr162896	transcription start site region 162896	925 bp downstream
Tssr162897	transcription start site region 162897	952 bp downstream
Tssr162898	transcription start site region 162898	976 bp downstream
Tssr162899	transcription start site region 162899	1122 bp downstream
Tssr162900	transcription start site region 162900	1132 bp downstream
Tssr162901	transcription start site region 162901	1163 bp downstream
Tssr162902	transcription start site region 162902	1245 bp downstream
Tssr162903	transcription start site region 162903	1306 bp downstream
Tssr162904	transcription start site region 162904	1407 bp downstream
Tssr162905	transcription start site region 162905	1491 bp downstream
Tssr162906	transcription start site region 162906	1495 bp downstream
Tssr162907	transcription start site region 162907	1568 bp downstream
Tssr162908	transcription start site region 162908	1592 bp downstream