rs225458699 SNP Detail

Summary

• ID
  rs225458699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92132565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGTT TGCTCAGGCG GCAGAGGTTA
  Y
  GGTCTGAAGA CTGGGAGCAA TGGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323071636	CHEV_9_92145350	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225458699					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92132565 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22145	CpG island 22145	within coordinates
Gm67683	predicted gene, 67683	within coordinates
Plscr1	phospholipid scramblase 1	within coordinates
Rr206878	regulatory region 206878	within coordinates
Rr383753	regulatory region 383753	within coordinates
Tssr86494	transcription start site region 86494	845 bp downstream
Tssr86495	transcription start site region 86495	823 bp downstream
Tssr86496	transcription start site region 86496	783 bp downstream
Tssr86497	transcription start site region 86497	759 bp downstream
Tssr86498	transcription start site region 86498	478 bp downstream
Tssr86499	transcription start site region 86499	452 bp downstream
Tssr86500	transcription start site region 86500	444 bp downstream
Tssr86501	transcription start site region 86501	414 bp downstream
Tssr86502	transcription start site region 86502	385 bp downstream
Tssr86503	transcription start site region 86503	325 bp downstream
Tssr86504	transcription start site region 86504	238 bp downstream
Tssr86505	transcription start site region 86505	201 bp downstream
Tssr90887	transcription start site region 90887	26 bp upstream
Tssr90888	transcription start site region 90888	within coordinates