rs225462405 SNP Detail

Summary

• ID
  rs225462405
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:23448595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGCAGGTC CCTAAGCAGA
  GGCCCGCGAG GGTTTACTGA AAGAATGCTT TTTTTTTTTC CATGCAGTGA TCCTCTAGAG
  ACAAAAGATC GTGCTTGCAA GTGCCTGGGA TTGTGGATAC AGTTACAATA AGGGTTTATT
  AATTCTTTCC ATCGTTTTTC ACCTTCTAGC AAAAACTGAA GCCACCATCT GGAAAGTGTT
  W
  CTTAGGAGAT TATTTTAACA AATAAAATAG GTAGTTCAAT GGGAGATGGG GAAGGACCTG
  GCTGCTCTGT GCACTTGCCA TTCAGTGGTC TGCTTATCAG CAAAACAAGC TGAAAGGGCT
  ATGGTGTTTA TTGGAGCTAT TGCATTTCGA TGTGTTCTTC GAGAAGTTAC ATCATTCAAA
  CTGCTGAAGC AATGCTGTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382708851	MGP_WTSI_11_23398595	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225462405					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382708851	MGP_WTSI_11_23398595	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:23448595 () rs orientation: forward

Symbol	Name	Function Class
1700030C12Rik	RIKEN cDNA 1700030C12 gene	within coordinates
Ahsa2	AHA1, activator of heat shock protein ATPase 2	565 bp upstream
Cpgi2649	CpG island 2649	201 bp distal
Gm47279	predicted gene, 47279	756 bp upstream
Rr402454	regulatory region 402454	321 bp downstream
Rr443827	regulatory region 443827	848 bp distal
Rr443828	regulatory region 443828	75 bp distal
Tssr100626	transcription start site region 100626	855 bp downstream
Tssr100627	transcription start site region 100627	806 bp downstream
Tssr100628	transcription start site region 100628	788 bp downstream
Tssr100629	transcription start site region 100629	763 bp downstream
Tssr100630	transcription start site region 100630	745 bp downstream
Tssr107128	transcription start site region 107128	633 bp upstream
Tssr107129	transcription start site region 107129	551 bp upstream
Tssr107130	transcription start site region 107130	534 bp upstream