rs225462409 SNP Detail

Summary

• ID
  rs225462409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:42458810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGGTGGGC TGCCACGGGT
  CGCAACCTTC CTGATACACC GGGGAGACCC GGAAGAGCTA GCATCCAGAA GCAACGAAAT
  TGCTCTCCCA GTTGCACGAA ACGCTCCAAC GCAACAGTCT AAGAGAGCTA GGCCAACGGA
  CATACAAGCC CGAGAGAGTA TTACTCTGGG GCTCAAATTC AGAGCTCTCA GAAGGACCAT
  Y
  CCGGCCTCCC AGCCTGCCCT CCCCAGGCCA CGCGCCAGGA CCCCGCGGCT GCCCGAGCGG
  TACCCACTTG TTGATCCGGC GGGCTTGCTC ATGCTGGCGG TCCCGGGGCG CAGCGGTTGG
  TGGGCACTGC CGGATTCCCG ACCCACGGCG CCCACGTCGC CGCCGGCCGC CGCCGCTCTC
  CAGCCGCCCT CCAGCCTGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380171522	MGP_WTSI_10_42302620	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225462409					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380171522	MGP_WTSI_10_42302620	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42458810 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1484	CpG island 1484	within coordinates
Gm38491	predicted gene, 38491	978 bp upstream
Nr2e1	nuclear receptor subfamily 2, group E, member 1	Intron
Rr430584	regulatory region 430584	within coordinates
Rr430585	regulatory region 430585	808 bp proximal
Rr430586	regulatory region 430586	1032 bp proximal
Tssr93098	transcription start site region 93098	973 bp upstream
Tssr97447	transcription start site region 97447	765 bp downstream
Tssr97448	transcription start site region 97448	790 bp downstream
Tssr97449	transcription start site region 97449	814 bp downstream
Tssr97450	transcription start site region 97450	832 bp downstream