rs225469393 SNP Detail

Summary

• ID
  rs225469393
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74721603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAGCTAAC CGAAGCCTTG GGCTTCCCAT
  TCTCTCAGCA AGGCAGATCC CGCCGTGAAT GCCCTAAGCA CGCAAACCCC GTTTAACTTG
  TGGCTGGCCA CGGAGAGGAG GGGCAAGTAG GGAAAGCGGA AACAGCGAGG AAGCCTGGTT
  M
  CATCTTCTCA CCCCCACCCA AGCCACGTGT GCGCGCGCGG TGGGCGGGGC CATCCCTGGC
  GCGGCCCCGC CCTCAGTGAG ACGCCGCGGC CCTGCGGGCG GGGGCTCCGG TCCGGGCTTT
  GGCTGCGGCC CCGGTGTAGT Agcgggggcg                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323749908	CHEV_11_74644279	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225469393					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74721603 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3246	CpG island 3246	within coordinates
Cpgi3247	CpG island 3247	1960 bp proximal
Gm74357	predicted gene, 74357	within coordinates
Mnt	max binding protein	143 bp upstream
Rr402717	regulatory region 402717	246 bp downstream
Rr450975	regulatory region 450975	1997 bp distal
Rr450976	regulatory region 450976	672 bp distal
Rr450977	regulatory region 450977	22 bp proximal
Rr450978	regulatory region 450978	199 bp proximal
Rr450979	regulatory region 450979	440 bp proximal
Tssr102911	transcription start site region 102911	111 bp upstream
Tssr102912	transcription start site region 102912	130 bp upstream
Tssr102913	transcription start site region 102913	158 bp upstream
Tssr102914	transcription start site region 102914	437 bp upstream
Tssr109144	transcription start site region 109144	875 bp upstream
Tssr109145	transcription start site region 109145	88 bp upstream
Tssr109146	transcription start site region 109146	1017 bp downstream
Tssr109147	transcription start site region 109147	1215 bp downstream
Tssr109148	transcription start site region 109148	1405 bp downstream
Tssr109149	transcription start site region 109149	1442 bp downstream