rs225474245 SNP Detail

Summary

• ID
  rs225474245
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:93778710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCAAACC CATGCCCCCT
  CCAAAAGGAA GGCCCTTTCT CACAAATGCT TCTTGTAACG TTTATTTATT TATAGGATAG
  GATGCTGTTG GGGGGTGGGG GCGGGGGTGG GGGTGGGGGA TCAGAGAACA GGTGGAGGTA
  GTCATCTTAA CTTATGCCAT GTGCGAACCA GGAATCAAAC CCAGGTCATC AAGATTGGGA
  R
  CAGACACCTT TAACCTACTA AGAACTTGCT CGAACCTGCC TGTCTTCCCC TACCCCCACC
  CCACCCCTCA TGTGTGTAAG TGTAAGAATT CTTAGACTTG AAATGTTTGT TACAATTTAT
  TGTTTACTTT TGACTTTTTA ATCTTTTTTT TTAATTTATT TATTATATGT AAGTACACTG
  TAGCTGTCTT TAGACACACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384313920	MGP_WTSI_11_93749198	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225474245					SNP	A	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384313920	MGP_WTSI_11_93749198	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:93778710 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3539	CpG island 3539	1311 bp distal
Mbtd1	mbt domain containing 1	within coordinates
Rr247507	regulatory region 247507	109 bp distal
Rr366736	regulatory region 366736	1790 bp downstream
Tssr104151	transcription start site region 104151	1960 bp downstream
Tssr104152	transcription start site region 104152	1730 bp downstream
Tssr104153	transcription start site region 104153	1674 bp downstream
Tssr104154	transcription start site region 104154	1650 bp downstream
Tssr104155	transcription start site region 104155	1625 bp downstream
Tssr110110	transcription start site region 110110	1744 bp upstream
Tssr110111	transcription start site region 110111	1372 bp upstream