rs225474827 SNP Detail

Summary

• ID
  rs225474827
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164300890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACTCTCA GAGAAGGCGG
  AGATCGAAAA TGAATGTGGA GGCAGGCAAG GTCATGGCGT GATTTCAGAA GCTGTGCTTT
  CTTCTCATTG GATGAGCCAC CTCAACACCC ACTCTCCTGC CATCAAATGT AGCCGTGTCT
  GAGCACAGGG CAATGTCTCA TGTGTCCAAA CCTGCCTAGC CTCCAATGGA CACAAACCCA
  B
  CATTGCAATC CCTGGAAACA TTGAATTATA ATGTCTCCTT TGCTGCAGTA TGGCACACAC
  TTTTAATTTC AGCACTTGGG AGGCAGAGGC AGGTGGATCT CTTGTGAGTT CCAGGCCATT
  CTGGTCTACA AAGCAAGTTC TAGGAAAGCC AGCAGTGTGA TTACACAAAG AAAGAAACCC
  TGTCTCGAGA AAACAAGAAC                                            
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356432570	MGP_WTSI_2_164284470	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225474827					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356432570	MGP_WTSI_2_164284470	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164300890 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12661	CpG island 12661			1823 bp proximal
Gm14302	predicted gene 14302			924 bp downstream
Gm20458	predicted gene 20458			1997 bp upstream
Rr367360	regulatory region 367360			1690 bp upstream
Rr397476	regulatory region 397476			1844 bp downstream
Rr569623	regulatory region 569623			1984 bp distal
Rr569624	regulatory region 569624			within coordinates
Rr569625	regulatory region 569625			1763 bp distal
Rr569626	regulatory region 569626			1433 bp proximal
Rr569627	regulatory region 569627			1815 bp proximal
Rr569628	regulatory region 569628			1891 bp proximal
Sys1	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant
Tssr21592	transcription start site region 21592			1982 bp downstream
Tssr21593	transcription start site region 21593			1975 bp upstream