rs225480323 SNP Detail

Summary

• ID
  rs225480323
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11347907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAA ATTTAAAATT TTCAACAGAA
  W
  TTTTCTCTTT TATTGAAATT TCCTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325721050	CHEV_19_11445033	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225480323					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11347907 () rs orientation: forward

Symbol	Name	Function Class
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Rr544325	regulatory region 544325	699 bp proximal
Tssr155162	transcription start site region 155162	1988 bp upstream
Tssr155163	transcription start site region 155163	1998 bp upstream
Tssr158339	transcription start site region 158339	1699 bp downstream
Tssr158340	transcription start site region 158340	1806 bp downstream
Tssr158341	transcription start site region 158341	1833 bp downstream