rs225480649 SNP Detail

Summary

• ID
  rs225480649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70704872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAATTGAG CTATTACTTA
  ATAAGGAGAA TTAATAAAAT AAAACTTAAG AGCATAGTTT AATCTCATAA ACAAGATAAT
  AAGCAAAACA AAACATTTTT TCATCCATGT AAGTTTAAAA GCAGGTAAAA TTTAAAATTA
  AGAGAGACAT AAGTTTTGAG GTAGCAAGAT GGAAACTCTG GGGCTTGGGG AATGTTCTGT
  Y
  TCTCTGTATG GGATGTGAAA GTTACTATTG TGGAATTGGG ATCTATGTTC TTCCTGTATA
  TATTGTATAC TTCATAATAA CTTCACCTAA AGAAATATCT AATACCCAGT GCATACATAA
  AAGAGGATAC AAGGAATGAA TCATACGTCA AGGCCAGAAA GACAATAAAG TAGGGGATCC
  AGGATCAAAT CTCCCACAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815818	CHEV_6_70677882	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225480649					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70704872 () rs orientation: forward

Symbol	Name	Function Class
Gm30211	predicted gene, 30211	1325 bp upstream
Gm68839	predicted gene, 68839	922 bp upstream
Igk	immunoglobulin kappa chain complex	1134 bp downstream
Igkc	immunoglobulin kappa constant	1134 bp downstream
Rr158	regulatory region 158	1937 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399686	regulatory region 399686	1077 bp downstream
Tssr1880	transcription start site region 1880	1037 bp downstream
Tssr56957	transcription start site region 56957	1416 bp downstream
Tssr56958	transcription start site region 56958	1400 bp downstream
Tssr56959	transcription start site region 56959	1382 bp downstream
Tssr56960	transcription start site region 56960	1367 bp downstream
Tssr56961	transcription start site region 56961	1351 bp downstream
Tssr56962	transcription start site region 56962	1339 bp downstream
Tssr56963	transcription start site region 56963	1292 bp downstream
Tssr56964	transcription start site region 56964	1281 bp downstream
Tssr56965	transcription start site region 56965	1269 bp downstream
Tssr56966	transcription start site region 56966	1261 bp downstream
Tssr56967	transcription start site region 56967	1241 bp downstream
Tssr56968	transcription start site region 56968	1211 bp downstream
Tssr56969	transcription start site region 56969	1187 bp downstream
Tssr56970	transcription start site region 56970	1168 bp downstream
Tssr56971	transcription start site region 56971	1156 bp downstream
Tssr56972	transcription start site region 56972	1097 bp downstream
Tssr56973	transcription start site region 56973	1086 bp downstream
Tssr56974	transcription start site region 56974	1056 bp downstream
Tssr56975	transcription start site region 56975	1019 bp downstream
Tssr61321	transcription start site region 61321	1379 bp upstream
Tssr61322	transcription start site region 61322	1231 bp upstream
Tssr61323	transcription start site region 61323	1150 bp upstream
Tssr61324	transcription start site region 61324	1073 bp upstream
Tssr61325	transcription start site region 61325	1040 bp upstream
Tssr61326	transcription start site region 61326	1027 bp upstream
Tssr61327	transcription start site region 61327	1001 bp upstream
Tssr61328	transcription start site region 61328	923 bp upstream