rs225485892 SNP Detail

Summary

• ID
  rs225485892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68911323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAAATTAAT CAGCGGTTCT
  TTAACATTGG GGAGGATGAG TGATACAGAC CGTTTTTCAA AATTATAGGG TCACTAAACA
  TTCAGGAAAA CAATGCCAAA ACACACAAAA CTTGGTATAC AATTTTCGGA GAGTCAGAAA
  CTCTGTCCCA ACCATCATTA TCCTCAAACT CAGGTTAAAA GCCCATTAAG GAAACTAAAC
  Y
  GCTCGGGATT AGGAATTGCC GCATCCATTT AACAACCCTT GCTATTCCTT TCACTGTGTA
  ACAAAGACAA ATGCTACTTA TGAACTAATT CCCCCATAAC GGTAACTAGT TATCACCAGC
  GAATCCTTTC TCCCACTAGG AGCCCTGCTG GCCAAATGGT TATTTAAACT CAACACCTTT
  CAGTAGTGTC ACTTACACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358313284	MGP_WTSI_3_68807912	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225485892					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358313284	MGP_WTSI_3_68807912	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68911323 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13255	CpG island 13255	460 bp proximal
Ift80	intraflagellar transport 80	within coordinates
Rr397713	regulatory region 397713	498 bp upstream
Smc4	structural maintenance of chromosomes 4	748 bp upstream
Tssr901	transcription start site region 901	422 bp downstream
Tssr29506	transcription start site region 29506	721 bp upstream
Tssr29507	transcription start site region 29507	979 bp upstream
Tssr29508	transcription start site region 29508	1128 bp upstream
Tssr29509	transcription start site region 29509	1309 bp upstream
Tssr29510	transcription start site region 29510	1347 bp upstream
Tssr29511	transcription start site region 29511	1450 bp upstream
Tssr29512	transcription start site region 29512	1743 bp upstream
Tssr29513	transcription start site region 29513	1937 bp upstream
Tssr33516	transcription start site region 33516	375 bp downstream
Tssr33517	transcription start site region 33517	462 bp downstream
Tssr33518	transcription start site region 33518	485 bp downstream
Tssr33519	transcription start site region 33519	513 bp downstream
Tssr33520	transcription start site region 33520	563 bp downstream
Tssr33521	transcription start site region 33521	575 bp downstream