rs225489662 SNP Detail

Summary

• ID
  rs225489662
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51108207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGGGGTG AGGCTGGGCG
  AGGGAGGGGC GGGGCTGGGG GCAGGGCGGG GCTGAGGGCG GGGCTGCCGC GTGTAGGATA
  TCGCAAATGC CGGGATTATA GGGTTGTGCT AACCACACCC GGTTTGATTT GCACAGTTTA
  GGGATTTATA CTTCCGGCTA GGCCAACTTT ACCAACCGAG TTGTATTTCC ACCCAATACA
  R
  TCATGCTCTG ATGCTATTAT GTATCCTGAA AATACCCCAG AGGCTTATGT GCTAAAATCA
  TGCCAGCCTT GGGCAGCTGT TGGGAGGTGG TGAAACGTTT AGAAAGAAAG ATCGCTGAGA
  GTGTGCCCTT GGCTGACCTT TGAAAGTCAG GCCCCTTCTC TCCCTTTTGC TTCCTTTCAT
  CCACCATGAA AGTAAACAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391081561	MGP_WTSI_14_51490425	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225489662					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391081561	MGP_WTSI_14_51490425	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51108207 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6408	CpG island 6408	262 bp distal
Gm26782	predicted gene, 26782	within coordinates
Rr404075	regulatory region 404075	within coordinates
Rr491714	regulatory region 491714	377 bp distal
Rr491715	regulatory region 491715	201 bp distal
Rr491716	regulatory region 491716	within coordinates
Rr491717	regulatory region 491717	731 bp proximal
Tep1	telomerase associated protein 1	190 bp upstream
Tssr125373	transcription start site region 125373	343 bp downstream
Tssr128379	transcription start site region 128379	1395 bp upstream
Tssr128380	transcription start site region 128380	200 bp upstream
Tssr128381	transcription start site region 128381	179 bp upstream