rs225497853 SNP Detail

Summary

• ID
  rs225497853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65519218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCCTGTTA CAAAATGAGA GGTAAAAGGA
  Tggatgaggc tataacttag tcatagagta catgcctagc atgtacaagg ccctagactc
  aattcccaAT AAAGcacaca tacacacaca cacattcaca tctacacaca catacataca
  Y
  actcccatac acacctacac acacacctac acacactcat acacacacac atatatatat
  acacacatac actcacacat acacacactc acacatacac acatacacac tcacgtacac
  tcatacatat acacttacac acacacatat                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325657203	CHEV_18_65545801	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225497853					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65519218 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpk2	alpha-kinase 2			Intron
				Noncoding-Transcript-Variant
D18Mit182	DNA segment, Chr 18, Massachusetts Institute of Technology 182			831 bp distal
Rr539524	regulatory region 539524			215 bp proximal
Tssr151600	transcription start site region 151600			104 bp downstream
Tssr151601	transcription start site region 151601			48 bp downstream