rs225498715 SNP Detail

Summary

• ID
  rs225498715
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55148923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATCTACCC AGAGGGTTAC
  TAGTTAGCCG GATGAACCGC TGCTCTTTGG ATGAGATACC ACCGATCTAT GGATATGGGA
  GTTTGGGTCC AAGAGGATCT GAAAGCTCTG GCCAGCCATG AAGATTGTTG GCTTGTGAGG
  CTCTCCTGGA GTCAGAGATC CACAGGGCAG AGGCAGTGGG GGGCGGGCAT GGAAGTGTGA
  R
  TTACTCAGAG AGTTATCTAG CAGAGATAAT TGACAACTGT AGGGGCTGGA GCCCTGGTCA
  GAGATGGTGT GTGTGTGTGT GTGATCCGTT TGTGAAGTTA ACTTATTGGT CAATGGGAAT
  GAAGCTGGTT ATATTTGGGG ATTAACATTA AGTTTTAGTA ATGTGGCTAC TGAGATGAGC
  TAACAGTCGT TAGTAGGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324640821	CHEV_14_55530303	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225498715					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55148923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6478	CpG island 6478	493 bp proximal
Slc22a17	solute carrier family 22 (organic cation transporter), member 17	within coordinates
Tssr128658	transcription start site region 128658	851 bp downstream
Tssr128659	transcription start site region 128659	977 bp downstream
Tssr128660	transcription start site region 128660	1571 bp downstream
Tssr128661	transcription start site region 128661	1598 bp downstream
Tssr128662	transcription start site region 128662	1623 bp downstream