rs225502373 SNP Detail

Summary

• ID
  rs225502373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115149533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACAGACCTG GAAATCATTC ATCACCTTTA
  GCACTGAGGC GTCTTAGAAA ATATATAATG TGAGCACAAT TGTTTTGTGt gttcttttga
  gacagggtct cactgggtag cactagctgg tctggaactt attctgcaga tcaagttggc
  Y
  tccaactcaa gagatctgct tgctctgcct cccgagtcct ggggttcagg acagacaggt
  gccgccaccg ctggactCCA CAGTGCCATT TTTAGGCTGA AGAGCTAAAT TAATTTTCCA
  GTTAAGCTTT CAACTGCAAG ACCTTTTTCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484095	CHEV_10_114750684	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225502373					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115149533 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	1186 bp proximal
Rab21	RAB21, member RAS oncogene family	within coordinates
Rr402237	regulatory region 402237	1836 bp upstream
Rr439191	regulatory region 439191	1536 bp distal
Rr439192	regulatory region 439192	354 bp distal
Rr439193	regulatory region 439193	1940 bp proximal
Rr439194	regulatory region 439194	1953 bp proximal
Tssr95806	transcription start site region 95806	1403 bp upstream
Tssr95807	transcription start site region 95807	1455 bp upstream
Tssr99318	transcription start site region 99318	1247 bp downstream
Tssr99319	transcription start site region 99319	1281 bp downstream
Tssr99320	transcription start site region 99320	1879 bp downstream
Tssr99321	transcription start site region 99321	1918 bp downstream
Tssr99322	transcription start site region 99322	1989 bp downstream