rs225503905 SNP Detail

Summary

• ID
  rs225503905
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105721623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGATATGT CCACTTCACC
  TTAGAAAGTA CCATTCCATT ACAGGCCATT TTAAGAACTA CTTTGGGCCC TTCTTTCTTC
  ACACAATAAA CATACATAAG ACGGCTGGGG ATGTAGGTCA GTGGTAGAAC TACATGCCTG
  GCACACACAA GGCCCTGGAA TTTAAGCACC AGAATCAAAG AGCTTCCTGT CTGAGACATA
  M
  ATGAGGTTTG CTTTGCACTT CCATGGAGCA GTCTGTGAGG TAAATTGGCT TGGGGGATTT
  TTAACTCATC CAAACGATTG GCAAAACACG AAACTAGGAA AAGCCACGAT CCTCAGGAGG
  CTGTGTCCTC TCAGAATGGG TCAGGCTTGG ACCTCACTTC CTTGGCTTCT AGCAATTAGG
  ACCATTTGGA CAAACCCTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863271	CHEV_3_105617225	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225503905					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105721623 () rs orientation: forward

Symbol	Name	Function Class
Gm5547	predicted gene 5547	1260 bp upstream
Rr582787	regulatory region 582787	768 bp proximal
Rr582788	regulatory region 582788	1283 bp proximal
Rr582789	regulatory region 582789	1826 bp proximal
Tssr31084	transcription start site region 31084	1223 bp upstream