rs225505884 SNP Detail

Summary

• ID
  rs225505884
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:84255271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTT TTAATCACAA TACTGGGAAG
  R
  TGGAGACAGT TGCAGCCTTG GAGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319824313	CHEV_1_84274125	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225505884					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:84255271 () rs orientation: forward

Symbol	Name	Function Class
Pid1	phosphotyrosine interaction domain containing 1	within coordinates
Rr414250	regulatory region 414250	737 bp proximal
Tssr7647	transcription start site region 7647	656 bp downstream
Tssr12655	transcription start site region 12655	745 bp downstream
Tssr12656	transcription start site region 12656	793 bp downstream
Tssr12657	transcription start site region 12657	867 bp downstream
Tssr12658	transcription start site region 12658	896 bp downstream
Tssr12659	transcription start site region 12659	923 bp downstream
Tssr12660	transcription start site region 12660	1369 bp downstream