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rs225511526 SNP Detail
Summary
  • ID
    rs225511526
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:141150152 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTGGCCCCTG GCCCGCCCCA
GGGTCCCCAC CTTTGCTCCT GCACTCTGCC TGGTCTAGCC TGGTCTCTGG GCCCTACTTT
CCCCCTATCT TTGTAGGCTT CGTACCCTGA TTTATGTTCC TTCCCTGTCT GTACCCAGGG
TAAACTACAG CCCTTTCCCA GTGGGCTCAC GGGCCAGGGA CCTTTACAGT CCCTCTCCAA
Y
CTAAGGGTCA CAGAACCTGT CTTTGGGGAC CATGCCATGG CACCTGAGGA CCCTCTAGGG
ATGGGCAAGG GATCCTGGGA TGAGGTCAGA GAGGAACCTG AGTGATGGAG ATGTAAGGGG
GGTGAGGAGA TGAGGACAGT CACCATGGTG GAAAGTGACC ACGGTGCAGG AGGGACAGCT
CCCTGGCACA GGGTAGAGGA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss363520365 MGP_WTSI_4_140978756 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225511526 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss363520365 MGP_WTSI_4_140978756 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:141150152 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi15227 CpG island 15227 1001 bp distal
Gm70184 predicted gene, 70184 1782 bp upstream
Gm70191 predicted gene, 70191 1505 bp downstream
Hspb7 heat shock protein family, member 7 (cardiovascular) within coordinates
Rr100445 regulatory region 100445 within coordinates
Tssr40054 transcription start site region 40054 1165 bp downstream
Tssr40055 transcription start site region 40055 1152 bp downstream
Tssr40056 transcription start site region 40056 1131 bp downstream
Tssr40057 transcription start site region 40057 1070 bp downstream
Tssr40058 transcription start site region 40058 1043 bp downstream
Tssr40059 transcription start site region 40059 1019 bp downstream
Tssr40060 transcription start site region 40060 959 bp downstream
Tssr40061 transcription start site region 40061 949 bp downstream
Tssr40062 transcription start site region 40062 318 bp downstream
Tssr40063 transcription start site region 40063 1155 bp upstream
Tssr40064 transcription start site region 40064 1215 bp upstream
Tssr40065 transcription start site region 40065 1230 bp upstream
Tssr40066 transcription start site region 40066 1359 bp upstream
Tssr40067 transcription start site region 40067 1407 bp upstream
Tssr40068 transcription start site region 40068 1459 bp upstream
Tssr40069 transcription start site region 40069 1591 bp upstream
Tssr40070 transcription start site region 40070 1676 bp upstream
Tssr40071 transcription start site region 40071 1700 bp upstream
Tssr40072 transcription start site region 40072 1745 bp upstream
Tssr40073 transcription start site region 40073 1768 bp upstream
Tssr40074 transcription start site region 40074 1793 bp upstream
Tssr40075 transcription start site region 40075 1806 bp upstream
Tssr40076 transcription start site region 40076 1833 bp upstream
Tssr40077 transcription start site region 40077 1852 bp upstream
Tssr44314 transcription start site region 44314 202 bp upstream
Tssr44315 transcription start site region 44315 1193 bp downstream
Tssr44316 transcription start site region 44316 1276 bp downstream
Tssr44317 transcription start site region 44317 1334 bp downstream
Tssr44318 transcription start site region 44318 1717 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory