rs225517341 SNP Detail

Summary

• ID
  rs225517341
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128616117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggggtgggg ggtagatggc ccagtcggcg
  aagtgccagc tatgcaaaca tcagggcctg attttggatt cccagcatcc attaaaCaca
  aacgaacaaa caaaaacaaa ccagaacaga agatatgaaa caaacaaaca aacaaacaaa
  M
  aaaaccaagc aaacaaacaa aaaacaaaca aaccaaacaG GTGCTAGAGT TTGGATctat
  aacccctgcc ctgagggacc agaaatgggc agattcctga atctcaaaga cctggcagcc
  cagccagact gacgacgtcc agtgtcagtg                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321306931	CHEV_4_128399568	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225517341					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128616117 () rs orientation: forward

Symbol	Name	Function Class
Gm33712	predicted gene, 33712	within coordinates
Phc2	polyhomeotic 2	within coordinates
Rr600012	regulatory region 600012	1730 bp distal
Rr600013	regulatory region 600013	877 bp distal
Rr600014	regulatory region 600014	1803 bp proximal
Tssr39071	transcription start site region 39071	133 bp downstream