rs225517425 SNP Detail

Summary

• ID
  rs225517425
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:5081176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tcacacctg gATTATGCAG TGAGTACTTA
  AAGCTTAAAG AGTACTTAAA GCTTAAAGAG TAGGTGCTAG CTACACTTCT GTGTTAACAG
  ACAGTGCTTA TTATCTCTGT CCCCAGAACC AGCGGGCTAA ACCCATAACC TTGGTTTTTT
  W
  AAAGAATGCT ATTATAGTAA AACAGTCTTC ATTTAATTCC TTGGTGTCTA GTCTACCTAA
  GTTCTGTTTA AATGTTACTA TCTCTAAAAT GTCTTGTTTC AGTAAGGTCC AAATCCTGAT
  TTTGGTTGCA Gtttcttttt aacagatttt                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322095909	CHEV_7_5029779	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225517425					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:5081176 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18280	CpG island 18280	1759 bp proximal
Rr167875	regulatory region 167875	1424 bp proximal
Tssr64418	transcription start site region 64418	1177 bp upstream
Tssr64419	transcription start site region 64419	1293 bp upstream
U2af2	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	within coordinates