rs225518734 SNP Detail

Summary

• ID
  rs225518734
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45236922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTCCTCT GGCATCTGGA
  ATGTTCTTCC TTTCTGACAT CCTCCTGGGA CTCGCAAATG TTCTTCAGGT GGCACTTTTC
  ATTCAGATTT TGGGGTTCTA GGTCTTTCCT TCTGCACAGG TCTGGGTGGC GTTATAGTAC
  CTAGCTTTCA CCCCCAGTTC TGATAACAAG AGTGCTGACT CTGTCAAGGC CAGTGCTGAA
  Y
  GAGTGTCCTC CGACTCAAGG TCAACTACCA GTTTTCTGGT GTTATCTATT CTGGCTTCTA
  CTGACTTCCC ACCGTGCTGG CTGATCGCCA GGTCTCTTCT GTTCTCACGC TCTTCCTTAC
  TCCCACTTCA CAAGGCACCC TGCTCTAATC CCCCGTGCAT CTTGCCTGAA CCTTCTTAGC
  CATTTCTCCT TGTAGCCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322943020	CHEV_9_45133707	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225518734					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45236922 () rs orientation: forward

Symbol	Name	Function Class
Rr203899	regulatory region 203899	743 bp distal
Rr203900	regulatory region 203900	within coordinates
Rr203901	regulatory region 203901	799 bp proximal
Tmprss13	transmembrane protease, serine 13	within coordinates