rs225525774 SNP Detail

Summary

• ID
  rs225525774
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96514248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCGTCCAG TCCTGTCTGA
  GACCCAGAGA AATTTTGAGT TTATCACCAG TTTTGCATTT CAGAATCGGA ACGGTGACCT
  CTTTCCCACT CCCAGAAGCA GGCTTTTTAG AAAGTAGATT GGCCCTGGGA AGTTTGTAAA
  TCTTCAACTA GTTGTTGCCA CTATCTTAAG GGAACTATTT ACAGTGAGTA AACTGTGTGG
  M
  TAACACCCTG GTATGTGAGG AGAGGGATGA TTTCCTGGTC CTGAGGTTTA ACTGCGCTGC
  CCTAAGAAGG AAGAAACTGA TTTAATAGAG CAGGGTTGTT CTTTGCCAGG TGCTAGAGTC
  AGCCAGTCAA GGAATGTTTT CAGACATATA GGAATGGCCC TAGGGCAAAA AGACGGGGCA
  GAAGGCGCCA AGACCATGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323111052	CHEV_9_96532614	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225525774					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96514248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22167	CpG island 22167	212 bp distal
Rasa2	RAS p21 protein activator 2	583 bp upstream
Rr684997	regulatory region 684997	88 bp distal
Tssr86611	transcription start site region 86611	1165 bp downstream
Tssr90973	transcription start site region 90973	1550 bp upstream
Tssr90974	transcription start site region 90974	1295 bp upstream
Tssr90975	transcription start site region 90975	999 bp upstream
Tssr90976	transcription start site region 90976	641 bp upstream