rs225525967 SNP Detail

Summary

• ID
  rs225525967
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:29230021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTTCTGT TTTTAGGTTC
  CTGAAGCAGG CGACGGGAAC AAGATGTGAA CTGTTTTCCC TCCCCAGAAG AAGAGGCCCT
  TTTTTTCCCT CCCGCGAAGG TGGGTGTTAG CGCTCGGGGC TGCCTGGGTG CTGCAGTTAA
  AGACAAGGGT GTCTGAGATC TGCGAGCCAG TGCCTGCTAA GAAGGCTGGA TGCTTGTGTA
  M
  AACGGCAGGA CTAATTGTTG CTTACTGCGA AAATGGCAGT GTTGAACTTT TCCTGTTGCT
  GTGGGAGAGT AATTGGGTGG TATTTATTGT GTCTCTTGGA TCCTTAAAGA AGCGGTCTTT
  GTTGGTTTTA CAGTGTGGTC TTGCAGAGGA AAACAATAAG TCGTCTCTTT CTCCCCCTTT
  CTCCCCAGTC TTAATTTTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402211709	MGP_WTSI_19_29327111	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225525967					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402211709	MGP_WTSI_19_29327111	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:29230021 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10735	CpG island 10735	166 bp distal
Gm41829	predicted gene, 41829	296 bp upstream
Gm59364	predicted gene, 59364	1120 bp upstream
Jak2	Janus kinase 2	Intron
Rr405910	regulatory region 405910	1225 bp upstream
Rr546087	regulatory region 546087	1294 bp distal
Rr546088	regulatory region 546088	783 bp distal
Rr546089	regulatory region 546089	998 bp distal
Rr546090	regulatory region 546090	170 bp distal
Rr546091	regulatory region 546091	within coordinates
Rr546092	regulatory region 546092	1349 bp proximal
Tssr155779	transcription start site region 155779	1983 bp downstream
Tssr155780	transcription start site region 155780	956 bp downstream
Tssr155781	transcription start site region 155781	767 bp downstream
Tssr155782	transcription start site region 155782	754 bp downstream
Tssr155783	transcription start site region 155783	720 bp downstream
Tssr155784	transcription start site region 155784	308 bp downstream
Tssr155785	transcription start site region 155785	179 bp downstream
Tssr155786	transcription start site region 155786	136 bp downstream
Tssr155787	transcription start site region 155787	31 bp downstream
Tssr158749	transcription start site region 158749	516 bp upstream