rs225534977 SNP Detail

Summary

• ID
  rs225534977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136722499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACCCTGG GAGTCTATAT
  TAGTTAGATT TCTTGTTGCT GCAACAAAGT GCCTGACAAA AGCGATTTAA GGAAGGAAGG
  AGTCCCTAAT TCTGGCTCAC AGTTCTACAG TCTGTGAGGG TTGGGGAAGG CATAGGGGCA
  GGAACATGAG CTGGTTACAC ACACACACAC CGGCAGCCAG GGGCAGGAAG TCAAGAGAGG
  Y
  GAAAGCCAGC GCTCAGCTCA TGTCTCCGTT TCATTCAGTC AAAAACCCAG CCCGTGGGAT
  AGTGCCGCCC TCACTTAAGG TAGGTTTTCC CACCTCACTC CAGTCTAGAA ACCCCCTCAC
  AGACGTACCC AGAGAGGTTT CCATGATGAT TCTAAATCTA ACCAAATGAA CAATAATAAA
  GATGGACCAT CACAGGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366861110	MGP_WTSI_5_137169515	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225534977					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366861110	MGP_WTSI_5_137169515	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136722499 () rs orientation: forward

Symbol	Name	Function Class
Gm71524	predicted gene, 71524	within coordinates
Myl10	myosin, light chain 10, regulatory	within coordinates
Rr120856	regulatory region 120856	1389 bp proximal
Rr127468	regulatory region 127468	1499 bp distal
Rr127469	regulatory region 127469	499 bp distal
Tssr49257	transcription start site region 49257	808 bp downstream
Tssr49258	transcription start site region 49258	675 bp downstream
Tssr49259	transcription start site region 49259	615 bp downstream
Tssr49260	transcription start site region 49260	541 bp downstream
Tssr49261	transcription start site region 49261	33 bp downstream
Tssr49262	transcription start site region 49262	3 bp downstream
Tssr49263	transcription start site region 49263	12 bp upstream
Tssr49264	transcription start site region 49264	22 bp upstream
Tssr49265	transcription start site region 49265	476 bp upstream
Tssr49266	transcription start site region 49266	498 bp upstream
Tssr49267	transcription start site region 49267	568 bp upstream
Tssr49268	transcription start site region 49268	1546 bp upstream
Tssr49269	transcription start site region 49269	1559 bp upstream
Tssr49270	transcription start site region 49270	1570 bp upstream
Tssr49271	transcription start site region 49271	1595 bp upstream
Tssr53869	transcription start site region 53869	1970 bp downstream