rs225538180 SNP Detail

Summary

• ID
  rs225538180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:37918417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTACAGGC AGAAGGGCAG AGGATGGGCT
  TTTGATAGAC TTCCCTTTGG GAATCCCAGG CTAGCTCTGG CTACACAGTC CCCACATCTG
  TCCACCTCTC CAGCCATCTG TCTACAAGTC AGAACAGTCT TCAGAGCAGA GAAGAGACTG
  Y
  TGCCTGTAGA AGTCTCTGTG GTTCTGGGGG TCTACTGCCT TTTGGACTCC AGCAtgcttc
  tccaggacac acagaaccct tcctcttcag ggcctccata ctagtcgctg ccagttcctg
  gggtgctgtt tctccattgg cacggctcgc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322180546	CHEV_7_39004012	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225538180					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:37918417 () rs orientation: forward

Symbol	Name	Function Class
Plekhf1	pleckstrin homology domain containing, family F (with FYVE domain) member 1	1661 bp downstream
Rr645765	regulatory region 645765	791 bp distal