rs225543882 SNP Detail

Summary

• ID
  rs225543882
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138889643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAAAATG TGACAACCAA
  TTTGATTATT TGCCTTCTAT AAACTTCTCT ATTAGTAATG TTGTTTTCTA TGAAGCGAAA
  ATTACCAAAA TTATATCACT GGTTTCAATA AACATAGGTT TACTTCAATA AACATGACAG
  GTTTATTCCA ACTTCTATCT GCACTAATTT TCGATAAACT ATGTATATAA ATCATACCTG
  Y
  CTGTGTTTAT TTATTAAGAT CAATAATATC TAACTCTTTA TTGTAGTTGG CCTCAAATGT
  GATTGATACA GAGTAAATAT ATGGGACATT TTGTCTTCAT ACTTAGTATA GCTTGAATAA
  GTAACAATCT TAACTTTATA GAGTAACTGT CATTTTATAT AATTCCAACA ACGGACATTG
  AAAACATTTG TTACTATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351626521	MGP_WTSI_1_140858482	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225543882					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351626521	MGP_WTSI_1_140858482	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138889643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi831	CpG island 831	1154 bp proximal
Dennd1b	DENN domain containing 1B	1804 bp upstream
Gm37045	predicted gene, 37045	within coordinates
Rr24804	regulatory region 24804	1915 bp distal
Rr24805	regulatory region 24805	1608 bp distal
Rr28649	regulatory region 28649	757 bp proximal
Tssr9163	transcription start site region 9163	1730 bp downstream
Tssr9164	transcription start site region 9164	1718 bp downstream
Tssr9165	transcription start site region 9165	1512 bp upstream
Tssr9166	transcription start site region 9166	1724 bp upstream
Tssr9167	transcription start site region 9167	1812 bp upstream