rs225544028 SNP Detail

Summary

• ID
  rs225544028
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119822478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGGGAGGT AATGGCCCTT CCGGGCTCCA CTTGAAATTC
  CCTAAACTCT TGACACCCCC AGAGGGGTTG AGATTGTTGT GTGAGTAGGG GGGGGGGGGG
  R
  ACGGCCTTGC GGAGGCCACC ATAGAACCGT CCTAATTTTT CATAGACTCT GGCATCTTAC
  TAACCCATGT GAGGTTTTCA TTGTTCATCT TTATGGTGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321665997	CHEV_5_120134422	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225544028					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119822478 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16459	CpG island 16459	1347 bp distal
Rr619145	regulatory region 619145	334 bp proximal
Tbx3	T-box 3	within coordinates
Tbx3os2	T-box 3, opposite strand 2	675 bp downstream
Tssr1618	transcription start site region 1618	117 bp upstream