rs225546397 SNP Detail

Summary

• ID
  rs225546397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147019552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGACCTG CCACTGTTTC
  TTAGCACTTT ATGAAGAAAG GCTCTAAATT ACCCCAGATA AAGAAAAACA GAAAGAAAGA
  GATCCCTCCT ATGTCTTCCA ATTGACTAAC AAGTGTCAGG TTATTTTTTA TTAGAATAAA
  TTACATTTTC CTGGCACAGG AAACATTTTG AAGAGGTGGA AATATATGCT TCAATTGTGG
  Y
  GGTGACAGTA ACAGAGACAG TTGACATCCA CAAGGCAGAC GAAAGAAAAA GGTTGAATGC
  CATCAACCTT TTCATCACAC TCCAAGGGAC AAGCACCAAG CCAAAGAATT GTAATTCTTT
  CTTTGGCATT GTGGTCCTAC TGTAAATGGA CTTTACCCAG ACATCCCTCA AATCCACAGA
  TGACCAGATT GTGCTCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320548158	CHEV_2_147003368	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225546397					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147019552 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12376	CpG island 12376	661 bp proximal
Cpgi12377	CpG island 12377	1010 bp proximal
Nkx2-2	NK2 homeobox 2	within coordinates
Rr566759	regulatory region 566759	within coordinates
Rr566760	regulatory region 566760	242 bp proximal
Rr566761	regulatory region 566761	636 bp proximal
Rr566762	regulatory region 566762	1324 bp proximal