rs225558456 SNP Detail

Summary

• ID
  rs225558456
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13820117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGTTAT TTATCACTAG
  AATGTCCCCC CTTGTCTCTG GTAACAGCCC TGTTCCAGAG TCTGTTTCAC CTGGTCATGT
  GGTCACACCA GCTCTCACGT GTTACTTTGC CATCCTTTCA GGATCACCCT GCTGTAGTAT
  ATAAACTGTC AGTCAGTCCC TTGCAGTCTC TGAATAGAAG TAGAAGCAAC ATACGGTTAT
  R
  TCATTTTTTT TTCTTCTCGC TCCAGTCCCC CTCTCCGGCT ACTGGTTAAG TCATTTTTAA
  AACTATTTTT TACTGTAGTA TGTATTCACT TCCACGTAAC ATGGTGAGAT AGACTTATTT
  CAGCCATTAG TTCGTTTTCT ACCGGTCATG TTAAATAATT TACAGTTTGT ATTTTAGTTC
  TTTTGAGTTT TGTTGTTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322509725	CHEV_8_13770117	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225558456					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13820117 () rs orientation: forward

Symbol	Name	Function Class
Cdc16	CDC16 cell division cycle 16	within coordinates
Gm46032	predicted gene, 46032	within coordinates
Tssr76425	transcription start site region 76425	1249 bp upstream