rs225559338 SNP Detail

Summary

• ID
  rs225559338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12113609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTTCCTG GGGCTGGAGG
  GTATAAATGG AGCGGTGGCT GCTGCAGCCA TCACTCTCGG CCCCAGGTCA CAGCAGTCAG
  TGTTGCGTTT GGGCTCAGCA AGCCTGAAGC AGAAAAAGAG GAAGAAGAGG ACGGAGAAGG
  AAAAGAAGGA GGAGTAGGAG AAGAAGGAAA AGAAGAGAAG AGACGAGACG AGAAGATGGG
  R
  AAAAAAAGCA AAAGGGAACA AAGAAGAAAA AGAACCAGAC AGCAACTTGC GCTGGGAGCC
  CGCAGGGAAG TGACTTTCAC AGCTTCCGGC CTGCCTGTCC GTCTGTGTCT GTCTGTCCAT
  CCAGTGGTAA GCCATCCTCC TCGGCCGGGC CCGGTCCGCC CCTGCAAGCC TCTGCTCCTC
  GTGGCAGCCC TGCGCCCCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ZALENDE/EiJ
ss360613279	MGP_WTSI_4_12040756	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	G	A	G	A	G	G	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ZALENDE/EiJ
rs225559338					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	G	A	G	A	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360613279	MGP_WTSI_4_12040756	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12113609 () rs orientation: forward

Symbol	Name	Function Class
Gm11839	predicted gene 11839	675 bp upstream
Rr589052	regulatory region 589052	162 bp distal
Rr589053	regulatory region 589053	295 bp distal
Tssr36503	transcription start site region 36503	244 bp downstream
Tssr36504	transcription start site region 36504	145 bp downstream