rs225559344 SNP Detail

Summary

• ID
  rs225559344
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135041790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGTTCCG CCCGGGTGTC
  CCCCAGTGCT CCTGCCGCTT GGGATTCTGG GTTCTGTTGG GGAGTGATGG ATGAGGAGGC
  AGTGACCTGG GGCTTGTCAG AAGGAGAAGC CTCACCCTGG GTCCTTCTGC CCTGCCTCTG
  CCCTGCCTCA TGCTATTTCC ACTCAGTTTT ACCACCCTTT GCCTCCAGGG GGTGCTGCGC
  M
  GGCATCTTGT AAAGGAGACC CTTAGTCTGG CTAGCCGGGA AGTAGACTAT GGGACTTTGC
  AGAATGGACA GTGTTTGAAG CTCCTGAGGA GAAAGGAGTT CCCACACAGC CCTACAGAAA
  TGCTACTGAG TGCTCTGGAG TCGCTTACCT TTCTATGAGC TTAGAGAGTC AAGGCCTGGT
  GACTGAGACT TGTCAGTTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366824617	MGP_WTSI_5_135488806	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225559344					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366824617	MGP_WTSI_5_135488806	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135041790 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	761 bp downstream
Abhd11os	abhydrolase domain containing 11, opposite strand	148 bp upstream
Gm73578	predicted gene, 73578	within coordinates
Rr110217	regulatory region 110217	within coordinates
Rr110218	regulatory region 110218	211 bp proximal
Rr124503	regulatory region 124503	1789 bp distal
Rr124504	regulatory region 124504	within coordinates
Tssr1662	transcription start site region 1662	199 bp upstream
Tssr1663	transcription start site region 1663	223 bp downstream
Tssr1664	transcription start site region 1664	241 bp downstream
Tssr53717	transcription start site region 53717	175 bp upstream
Tssr53718	transcription start site region 53718	128 bp upstream
Tssr53719	transcription start site region 53719	113 bp upstream
Tssr53720	transcription start site region 53720	68 bp upstream
Tssr53721	transcription start site region 53721	178 bp downstream
Tssr53722	transcription start site region 53722	195 bp downstream