rs225567045 SNP Detail

Summary

• ID
  rs225567045
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94966747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGGAGGA GGGGAAGAGC
  GATGTAATAG GTGTTTAATA TACAGAGTTC TCCTAGCCCG GGAAAGAAGC TAATGTTAGG
  TACTGGATTC TCAGGGTGCT GGGCAACAAA GACCCTACTT CCGAAGATGT CTGAAATGTG
  GAGCGGTCGC GTCTAGACAG GTTCTGGCCA GGTCAGCACT TGCCATGATT ACTGCCCCCC
  T
  CCCCCCACCC CCTTCCTCCA CTTGCCGCCA AGCCCCACAA TCGGAGAACT GCCGTCTTAC
  CCGCCCTCTT AATCCTGGCT CACAAGGAAA GGCCAGCAGC AGCAGGCCTG GAAGTCAGCG
  GGCCCAGGGC TCCAGTTTAG CTTAGGTCAG GTATCCGCGC ACATACCCCT CTCTCTGCAC
  CCCACCTCAC CGCCGCCAGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss384338872	MGP_WTSI_11_94937235	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs225567045					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384338872	MGP_WTSI_11_94937235	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94966747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3575	CpG island 3575	within coordinates
Gm53645	predicted gene, 53645	263 bp upstream
Gm57362	predicted gene, 57362	507 bp upstream
Itga3	integrin alpha 3	within coordinates
Rr454943	regulatory region 454943	984 bp distal
Rr454944	regulatory region 454944	265 bp distal
Rr454945	regulatory region 454945	17 bp proximal
Rr454946	regulatory region 454946	232 bp proximal
Rr454947	regulatory region 454947	498 bp proximal
Rr454948	regulatory region 454948	518 bp proximal
Rr454949	regulatory region 454949	783 bp proximal
Rr454950	regulatory region 454950	1051 bp proximal
Rr454951	regulatory region 454951	1715 bp proximal
Tssr3652	transcription start site region 3652	671 bp downstream
Tssr104346	transcription start site region 104346	1024 bp upstream
Tssr110254	transcription start site region 110254	645 bp downstream
Tssr110255	transcription start site region 110255	722 bp downstream
Tssr110256	transcription start site region 110256	736 bp downstream
Tssr110257	transcription start site region 110257	882 bp downstream