rs225567900 SNP Detail

Summary

• ID
  rs225567900
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34612542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCTGACA CACGTAAACA
  AACTGCTCCA CAATGCTCCC CAAACCAGTA ACGTCTCTCC AGTCTTATGA CACTGGCAGC
  TAGGTGGCTT ATTTTATATC AACGGTGTCT TAAGTGACAC ACCAGTAAGG TAAGGATTCA
  TACAGTAATT GACTGATGCA ACACTCGGAA AATGAAACAG AGAGGAGTGT GGTTTCTACT
  Y
  CCAAAGCCTC TGGGCCAGGG ATGGAACAGC CCAATTACCT AGCAAAAATT CTCTAAAGAT
  GGACTACAAA GACAGAGGTG AAGGGGTCAA GTTCCCCGGC CTGGGAGTTA GCAGAAAATA
  TAATGTATCA CAGAGTAGCA GGCAACTGGC TCAAGAAATA TGTAATGGTC TTTACAGCAA
  TACTCCTTAC TTAAGGGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374219971	MGP_WTSI_8_35208442	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225567900					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374219971	MGP_WTSI_8_35208442	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34612542 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20243	CpG island 20243	903 bp proximal
Leprotl1	leptin receptor overlapping transcript-like 1	within coordinates
Rr661962	regulatory region 661962	24 bp distal
Rr661963	regulatory region 661963	449 bp proximal
Rr661964	regulatory region 661964	1635 bp proximal
Tssr76861	transcription start site region 76861	139 bp downstream
Tssr76862	transcription start site region 76862	937 bp upstream
Tssr76863	transcription start site region 76863	972 bp upstream
Tssr76864	transcription start site region 76864	987 bp upstream
Tssr80896	transcription start site region 80896	759 bp downstream
Tssr80897	transcription start site region 80897	1193 bp downstream
Tssr80898	transcription start site region 80898	1329 bp downstream
Tssr80899	transcription start site region 80899	1344 bp downstream
Tssr80900	transcription start site region 80900	1365 bp downstream
Tssr80901	transcription start site region 80901	1386 bp downstream
Tssr80902	transcription start site region 80902	1586 bp downstream
Tssr80903	transcription start site region 80903	1630 bp downstream