rs225568394 SNP Detail

Summary

• ID
  rs225568394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:111505198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGCCATGG CGGCGGCAAG
  ATGGCGGCGC GGCCGCGTGA CCCGCCGCGC GTGTGGCGCA GTTTGGGGGG GGCCGGGCCG
  TGCGGGAGCG CGCCCGCGCG CGCGCCGTGG CTGAGTCAGG CCCGGGGCGC GTTTGTGACT
  CAGGGAGGCC GCACCTCTGC CCCGCCGGCC GCCGGAAGGG GGAGGCCGGG CGACGGGCTG
  Y
  GACCGTCGCG TAGCCATGGG GACGAGGGCG AAGGTCGGCC GTGCGCCGAG GGAGCGAGGG
  GAGGGAGCCC GGGCGCGGCT TCGGCCGTGG TCCTCGTGCT CCGACGGAGC CAATGGCTCC
  CAGCCTGGAC TTGCCGCCCT GAAGCCCCCG GAGTCGCCGA AGCCGCCCCT CGGCGGTTGG
  CAGGTCCGGC TCGACGTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss387360279	MGP_WTSI_12_112776975	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs225568394					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387360279	MGP_WTSI_12_112776975	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111505198 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	within coordinates
Eif5	eukaryotic translation initiation factor 5	Intron
Gm56546	predicted gene, 56546	529 bp upstream
Gm58608	predicted gene, 58608	within coordinates
Gm60631	predicted gene, 60631	130 bp upstream
Rr403512	regulatory region 403512	636 bp downstream
Rr473213	regulatory region 473213	within coordinates
Rr473214	regulatory region 473214	12 bp distal
Rr473215	regulatory region 473215	29 bp proximal
Tssr115319	transcription start site region 115319	1559 bp downstream
Tssr115320	transcription start site region 115320	521 bp downstream
Tssr115321	transcription start site region 115321	486 bp downstream
Tssr115322	transcription start site region 115322	389 bp downstream
Tssr115323	transcription start site region 115323	282 bp downstream
Tssr115324	transcription start site region 115324	21 bp upstream
Tssr115325	transcription start site region 115325	55 bp upstream
Tssr115326	transcription start site region 115326	670 bp upstream
Tssr115327	transcription start site region 115327	1449 bp upstream
Tssr117828	transcription start site region 117828	808 bp upstream
Tssr117829	transcription start site region 117829	158 bp upstream